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Below
are listed the representative strains/isolates for each FMDV
topotype along with an accession number pointing to the complete
genome sequence (where available) or at minimum the complete VP1
sequence. These can form the basic references points of a
phylogenetic tree.
|
| |
Type |
Topotype |
Strain/isolate name |
Region |
Accession no. |
Reference |
| |
O |
CATHAY |
O/Yunlin/Taiwan/97 |
CG |
AF308157 |
Beard and Mason, 2000 |
| |
|
EA-1 |
O/K83/79 (Kenya) |
VP1 |
AJ303511 |
Samuel and Knowles, 2001 |
| |
|
EA-2 |
O/MAL/1/98 (Malawi) |
VP1 |
DQ165074 |
Knowles et al., 2005 |
| |
|
EA-3 |
O/SUD/2/86 (Sudan) |
VP1 |
DQ165075 |
Knowles et al., 2005 |
| |
|
EURO-SA |
O1/Kaufbeuren/FRG/66
(Germany) |
CG |
M35873+
X00871 |
Zibert et al., 1990; Forss
et al., 1984 |
| |
|
ISA-1 |
O11/ISA/1/62
(Indonesia) |
CG |
AY593813 |
Carrillo et al., 2005 |
| |
|
ISA-2 |
O/JAV/5/72 (Java) |
VP1 |
AJ303509 |
Samuel and Knowles, 2001 |
| |
|
ME-SA |
O1/Manisa/TUR/69 (Turkey) |
CG |
AY593823 |
Carrillo et al., 2005 |
| |
|
SEA |
O/CAM/3/98 (Cambodia) |
VP1 |
AJ294910 |
Knowles et al., 2001 |
| |
|
WA |
O/GHA/5/93 (Ghana) |
VP1 |
AJ303488 |
Samuel and Knowles, 2001 |
| |
|
download FASTA file containing these
FMDV O VP1 sequences (coming soon) |
| |
A |
AFRICA |
A21/Lumbwa/KEN/3/64 |
CG |
AY593761 |
Carrillo et al., 2005 |
| |
|
AFRICA |
A23/Kitale/KEN/64 |
CG |
AY593766 |
Carrillo et al., 2005 |
| |
|
ASIA |
A22/IRQ/24/64 (Iraq) |
CG |
AY593763 |
Carrillo et al., 2005 |
| |
|
EURO-SA |
A12/119/Kent/UK/32 |
CG |
L11360+
M10975 |
Bunch et al., 1994; Robertson
et al., 1985 |
| |
|
EURO-SA |
A24/Cruzeiro/BRA/55
(Brazil) |
CG |
AY593768 |
Carrillo et al., 2005 |
| |
|
download FASTA file containing these FMDV A
VP1 sequences (coming soon) |
| |
C |
AFRICA |
C/K267/67 (KEN/32/70) |
VP1 |
n/a |
Knowles et al., unpub. |
| |
|
ASIA |
C/IND/51/79 (1977) |
VP1 |
n/a |
Knowles et al., unpub. |
| |
|
EURO-SA |
C1/Santa Pau/Spain/70
(C-S8c1) |
CG |
AJ133357 |
Toja et al., 1999 |
| |
|
EURO-SA |
C3/Resende/BRA/55 |
P1 |
M90381 |
Martínez et al., 1992 |
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|
EURO-SA |
C3/Indaial/BRA/71 |
P1 |
M90376 |
Martínez et al., 1992 |
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|
EURO-SA |
C/PHI/7/84 |
VP1 |
n/a |
Knowles et al.,
unpub. |
| |
|
- |
C/Germany/c.26 (CGC) |
P1 |
M90368 |
Martínez et al., 1992 |
| |
|
- |
C/UK/149/34 |
CG |
AY593810 |
Carrillo et al., 2005 |
| |
|
download
FASTA file containing these FMDV C VP1 sequences (coming soon) |
| |
Asia 1 |
- |
Asia1/PAK/1/54 |
CG |
AY593795 |
Carrillo et al., 2005 |
| |
|
- |
Asia1/Shamir/ISR/89 |
VP1 |
n/a |
|
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|
- |
Asia1/IND/63/72 |
CG |
AY304994 |
Saravanan et al., unpub. |
| |
|
- |
Asia1/YNBS/China/58 |
CG |
AY390432 |
Chang et al., unpub. |
| |
|
download FASTA file containing these FMDV
Asia 1 VP1 sequences (coming soon) |
| |
SAT 1 |
SEZ |
SAT1/RV/11/37 |
CG |
AY593839 |
Carrillo et al., 2005 |
| |
|
WZ |
SAT1/BOT/1/68 |
CG |
AY593845 |
Carrillo et al., 2005 |
| |
|
NWZ |
SAT1/T155/71 |
VP1 |
n/a |
Knowles et al., unpub. |
| |
|
- |
SAT1/UGA BUFF/21/70 |
VP1 |
n/a |
Knowles et al., unpub. |
| |
|
- |
SAT1/UGA/47/71 |
VP1 |
n/a |
Knowles et al., unpub. |
| |
|
- |
SAT1/NIG/11/75 |
VP1 |
AF431711 |
Sangare et al., 2003 |
| |
|
- |
SAT1/ISR/4/62 |
CG |
AY593844 |
Carrillo et al., 2005 |
| |
|
download
FASTA file containing these FMDV SAT 1 VP1 sequences (coming soon) |
| |
SAT 2 |
- |
SAT2/RHO/1/48 |
CG |
AY593847 |
Carrillo et al., 2005 |
| |
|
- |
SAT2/KEN/3/57 |
L-frag |
AJ251473 |
J.W.I. Newman et al.,
unpub. |
| |
|
- |
SAT2/SA/106/59 |
CG |
AY593848 |
Carrillo et al., 2005 |
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|
- |
SAT2/ANG/4/74 |
VP1 |
AF479417 |
Bastos et al., 2003 |
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|
- |
SAT2/K183/74 |
VP1 |
n/a |
Knowles et al., unpub. |
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|
- |
SAT2/SEN/5/75 |
VP1 |
AF367140 |
Bastos et al., 2003 |
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|
- |
SAT2/GAM/8/79 |
VP1 |
AF479410 |
Bastos et al., 2003 |
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|
- |
SAT2/SAU/6/2000 |
VP1 |
AF367135 |
van Rensburg et al., 2002;
Bastos et al., 2003 |
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|
- |
SAT2/ZIM/7/83 |
CG |
AF540910 |
van Rensburg and Nel, 1999; van
Rensburg et al., 2002; van Rensburg et al., 2004 |
| |
|
download
FASTA file containing these FMDV SAT 2 VP1 sequences (coming soon) |
| |
SAT 3 |
SEZ |
SAT3/RV/7/34 |
VP1 |
n/a |
Stirling and Knowles, unpub. |
| |
|
WZ |
SAT3/BEC/1/65 |
CG |
AY593853 |
Carrillo et al., 2005 |
| |
|
NWZ |
SAT3/MAL/3/76 |
VP1 |
n/a |
Stirling and Knowles, unpub. |
| |
|
EA |
SAT3/UGA/2/97 |
P1 |
DQ009742 |
Maree et al., unpub. |
| |
|
download
FASTA file containing these FMDV SAT 3 VP1 sequences (coming soon) |
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