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Laboratory for
Foot-and-Mouth Disease

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Below are listed the representative strains/isolates for each FMDV topotype along with an accession number pointing to the complete genome sequence (where available) or at minimum the complete VP1 sequence. These can form the basic references points of a phylogenetic tree.
 
  Type Topotype Strain/isolate name Region Accession no. Reference
  O CATHAY O/Yunlin/Taiwan/97 CG AF308157 Beard and Mason, 2000
    EA-1 O/K83/79 (Kenya) VP1 AJ303511 Samuel and Knowles, 2001
    EA-2 O/MAL/1/98 (Malawi) VP1 DQ165074 Knowles et al., 2005
    EA-3 O/SUD/2/86 (Sudan) VP1 DQ165075 Knowles et al., 2005
    EURO-SA O1/Kaufbeuren/FRG/66 (Germany) CG M35873+
 X00871		 Zibert et al., 1990; Forss et al., 1984
    ISA-1 O11/ISA/1/62 (Indonesia) CG AY593813 Carrillo et al., 2005
    ISA-2 O/JAV/5/72 (Java) VP1 AJ303509 Samuel and Knowles, 2001
    ME-SA O1/Manisa/TUR/69 (Turkey) CG AY593823 Carrillo et al., 2005
    SEA O/CAM/3/98 (Cambodia) VP1 AJ294910 Knowles et al., 2001
    WA O/GHA/5/93 (Ghana) VP1 AJ303488 Samuel and Knowles, 2001
   

download FASTA file containing these FMDV O VP1 sequences (coming soon)
  A AFRICA A21/Lumbwa/KEN/3/64 CG AY593761 Carrillo et al., 2005
    AFRICA A23/Kitale/KEN/64 CG AY593766 Carrillo et al., 2005
    ASIA A22/IRQ/24/64 (Iraq) CG AY593763 Carrillo et al., 2005
    EURO-SA A12/119/Kent/UK/32 CG L11360+
 M10975		 Bunch et al., 1994; Robertson et al., 1985
    EURO-SA A24/Cruzeiro/BRA/55 (Brazil) CG AY593768 Carrillo et al., 2005
   

download FASTA file containing these FMDV A VP1 sequences (coming soon)
  C AFRICA C/K267/67 (KEN/32/70) VP1 n/a Knowles et al., unpub.
    ASIA C/IND/51/79 (1977) VP1 n/a Knowles et al., unpub.
    EURO-SA C1/Santa Pau/Spain/70
(C-S8c1)		 CG AJ133357 Toja et al., 1999
    EURO-SA C3/Resende/BRA/55 P1 M90381 Martínez et al., 1992
    EURO-SA C3/Indaial/BRA/71 P1 M90376 Martínez et al., 1992
    EURO-SA C/PHI/7/84 VP1 n/a Knowles et al., unpub.
    - C/Germany/c.26 (CGC) P1 M90368 Martínez et al., 1992
    - C/UK/149/34 CG AY593810 Carrillo et al., 2005
    download FASTA file containing these FMDV C VP1 sequences (coming soon)
  Asia 1 - Asia1/PAK/1/54 CG AY593795 Carrillo et al., 2005
    - Asia1/Shamir/ISR/89 VP1 n/a  
    - Asia1/IND/63/72 CG AY304994 Saravanan et al., unpub.
    - Asia1/YNBS/China/58 CG AY390432 Chang et al., unpub.
   

download FASTA file containing these FMDV Asia 1 VP1 sequences (coming soon)
  SAT 1 SEZ SAT1/RV/11/37 CG AY593839 Carrillo et al., 2005
    WZ SAT1/BOT/1/68 CG AY593845 Carrillo et al., 2005
    NWZ SAT1/T155/71 VP1 n/a Knowles et al., unpub.
    - SAT1/UGA BUFF/21/70 VP1 n/a Knowles et al., unpub.
    - SAT1/UGA/47/71 VP1 n/a Knowles et al., unpub.
    - SAT1/NIG/11/75 VP1 AF431711 Sangare et al., 2003
    - SAT1/ISR/4/62 CG AY593844 Carrillo et al., 2005
    download FASTA file containing these FMDV SAT 1 VP1 sequences (coming soon)
  SAT 2 - SAT2/RHO/1/48 CG AY593847 Carrillo et al., 2005
    - SAT2/KEN/3/57 L-frag AJ251473 J.W.I. Newman et al., unpub.
    - SAT2/SA/106/59 CG AY593848 Carrillo et al., 2005
    - SAT2/ANG/4/74 VP1 AF479417 Bastos et al., 2003
    - SAT2/K183/74 VP1 n/a Knowles et al., unpub.
    - SAT2/SEN/5/75 VP1 AF367140 Bastos et al., 2003
    - SAT2/GAM/8/79 VP1 AF479410 Bastos et al., 2003
    - SAT2/SAU/6/2000 VP1 AF367135 van Rensburg et al., 2002; Bastos et al., 2003
    - SAT2/ZIM/7/83 CG AF540910 van Rensburg and Nel, 1999; van Rensburg et al., 2002; van Rensburg et al., 2004
    download FASTA file containing these FMDV SAT 2 VP1 sequences (coming soon)
  SAT 3 SEZ SAT3/RV/7/34 VP1 n/a Stirling and Knowles, unpub.
    WZ SAT3/BEC/1/65 CG AY593853 Carrillo et al., 2005
    NWZ SAT3/MAL/3/76 VP1 n/a Stirling and Knowles, unpub.
    EA SAT3/UGA/2/97 P1 DQ009742 Maree et al., unpub.
    download FASTA file containing these FMDV SAT 3 VP1 sequences (coming soon)