Foot-and-Mouth Disease Virus:
Complete (or Nearly Complete) Genome Sequences

(this currently doesn't include most of those published by Carrillo et al., 2005,
due to a number of issues concerning the identification of the viruses)

Virus Strain

Region

Length

Accession No.

Reference Comments
FMDV-O1 Campos/Brazil/58 CG (see remarks) 8168 AJ320488 Pereda et al., 2002. a poly(C) tract of undetermined length lies between nt 368 and 369
FMDV-O Akesu/58 CG 8147 AF511039 Liu et al., 2007 Position and length of poly(C) tract not indicated

FMDV-O

OMIII (artificially attenuated
from strain Akesu/58)
CG 8083 AY359854 Wang et al., unpub.  
FMDV-O CHA/1/99 (Tibet) CG 8173 AF506822 Zhang et al., unpublished data Position and length of poly(C) tract not indicated
FMDV-O Tibet/CHA/99 CG 8183 AJ539138 Mason et al., 2003  
FMDV-O NY00 (China?) CG (minus S-fragment
& polyC)
7731 AY333431 Zheng et al., unpublished  
FMDV-O HLJOC12/03(China) CG (minus S-fragment
& polyC)
7767 DQ119643 Li et al., unpub.  
FMDV-O lz (China) CG 8104 DQ248888 Ma et al., unpublished  
FMDV-O WFL (China) CG 8155 EF175732 Ren et al., 2007  
FMDV-O GBF15 (China) CG 8168 DQ478936 Gu et al., unpub.  
FMDV-O GBF15  (China) (derivative - BHK100+) CG 8166 DQ478937 Gu et al., unpub.  

FMDV-O

FRA/1/2001 CG 8234 AJ633821 Nobiron et al., unpub. includes 47 nt poly(A) tail
FMDV-O1 Kaufbeuren/FRG/66 CG: S-frag.+L-frag. ~366 M35873 Zibert et al., 1990 RNA genome starts at position 30 (TTGAAAGGGGG....)
7804 X00871 Forss et al., 1984  

FMDV-O

HKN/2002 CG 8104 AY317098 Feng et al., unpublished (c)  
FMDV-O HKN/20/2010 CG 8123 HM229661 Hamid et al., unpublished  
FMDV-O JPN/2000 (Miyazaki, Japan) CG: S-frag.+L-frag. 367 AB079062 Kanno et al., 2002  
7822 AB079061 Kanno et al., 2002  
FMDV-O SAR/19/2000* CG 8184 AJ539140 Mason et al., 2003  
FMDV-O SKR/2000 CG (minus S-fragment
& polyC)
7813 AF377945 Kweon et al., 2002 incl. 14 nt of the poly(A) tail
FMDV-O SKR/2000 CG 8182 AJ539139 Mason et al., 2003  
FMDV-O SKR/2000 (Chungju county; cattle) CG: S-frag.+L-frag. 368 AY312586 Oem et al., unpublished (a) see also: AH012985
7799 AY312587 Oem et al., unpublished (a) see also: AH012985
FMDV-O SKR/2002 (pigs) CG: S-frag.+L-frag. 369 AY312588 Oem et al., unpublished (b) see also: AH012984
7803 AY312589 Oem et al., unpublished (b) see also: AH012984
FMDV-O SKR/14/02 (cattle) CG 8213 EF614457 Lee et al., unpub.  
FMDV-O Tau-YuanTW97 (Taiwan, 1997) CG (minus S-fragment
& polyC)
7739 AF154271 Kuo et al., unpublished  
FMDV-O Chu-Pei (Taiwan) (pig strain) CG (minus S-fragment
& polyC)
7733 AF026168 Tsai et al., 2000  
FMDV-O Yunlin/Taiwan/97 CG 8134 AF308157 Beard and Mason, 2000  
FMDV-O TAW/2/99 (TC) CG 8183 AJ539136 Mason et al.,2003  
FMDV-O TAW/2/99 (BOV) CG 8183 AJ539137 Mason et al., 2003  
FMDV-O6 OV1/UK/24
(O Vallee, strain 1)
CG 8201 AY593829 Carrillo et al., 2005  
FMDV-O1 BFS 1860/UK/67 CG 8194 AY593815 Carrillo et al., 2005  
CG 8194 AY593816 Carrillo et al., 2005  
FMDV-O UK/2001-ED CG 8200 AY593831 Carrillo et al., 2005  
FMDV-O UK/2001-FB CG 8200 AY593832 Carrillo et al., 2005  
FMDV-O UK/2001x CG 8199 AY593836 Carrillo et al., 2005  
FMDV-O UKG/11/2001 CG 8193 DQ404180 Cottam et al., 2006  
FMDV-O UKG/35/2001 CG 8183 AJ539141 Mason et al., 2003  
FMDV-O UKG/126/2001 CG 8193

DQ404179

Cottam et al., 2006  
FMDV-O UKG/127/2001 CG 8193 DQ404178 Cottam et al., 2006  
FMDV-O UKG/128/2001 CG 8193 DQ404177 Cottam et al., 2006  
FMDV-O UKG/150/2001 CG 8193 DQ404176 Cottam et al., 2006  
FMDV-O UKG/173/2001 CG 8193 DQ404175 Cottam et al., 2006  
FMDV-O UKG/220/2001 CG 8195 DQ404173 Cottam et al., 2006  
FMDV-O UKG/438/2001 CG 8193 DQ404174 Cottam et al., 2006  
FMDV-O UKG/621/2001 CG 8193 DQ404172 Cottam et al., 2006  
FMDV-O UKG/4569/2001 CG 8193 DQ404171 Cottam et al., 2006  
FMDV-O UKG/7038/2001 CG 8193 DQ404169 Cottam et al., 2006  
FMDV-O UKG/7675/2001 CG 8193 DQ404170 Cottam et al., 2006  
FMDV-O UKG/9011/2001 CG 8193 DQ404168 Cottam et al., 2006  
FMDV-O UKG/9327/2001 CG 8188 DQ404167 Cottam et al., 2006  
FMDV-O UKG/9788/2001 CG 8193 DQ404166 Cottam et al., 2006  
FMDV-O UKG/9964/2001 CG 8193 DQ404165 Cottam et al., 2006  
FMDV-O UKG/11676/2001 CG 8193 DQ404164 Cottam et al., 2006  
FMDV-O UKG/14339/2001 CG 8191 DQ404163 Cottam et al., 2006  
FMDV-O UKG/14476/2001 CG 8192 DQ404162 Cottam et al., 2006  
FMDV-O UKG/14391/2001 CG 8189 DQ404161 Cottam et al., 2006  
FMDV-O UKG/14524/2001 CG 8187 DQ404160 Cottam et al., 2006  
FMDV-O UKG/14603/2001 CG 8188 DQ404159 Cottam et al., 2006  
FMDV-O UKG/15101/2001 CG 8187 DQ404158 Cottam et al., 2006  
FMDV-O UKG/7/2007 (IP1b) CG 8176 EU448371 Cottam et al., 2008b
FMDV-O UKG/7B/2007 (IP1b) CG 8176 EU448372 Cottam et al., 2008b  
FMDV-O UKG/93/2007 (IP2b) CG 8176 EU448373 Cottam et al., 2008b  
FMDV-O UKG/150/2007 (IP2c) CG 8176 EU448374 Cottam et al., 2008b  
FMDV-O UKG/643/2007 (IP3b) CG 8176 EU448375 Cottam et al., 2008b  
FMDV-O UKG/1153/2007 (IP3c) CG 8176 EU448376 Cottam et al., 2008b  
FMDV-O UKG/800/2007 (IP4b) CG 8176 EU448377 Cottam et al., 2008b  
FMDV-O UKG/1421/2007 (IP5) CG 8176 EU448378 Cottam et al., 2008b  
FMDV-O UKG/1484/2007 (IP6b) CG 8176 EU448379 Cottam et al., 2008b  
FMDV-O UKG/1679/2007 (IP7) CG 8176 EU448380 Cottam et al., 2008b
FMDV-O UKG/2366/2007 (IP8 CG 8176 EU448381 Cottam et al., 2008b  
FMDV-O Uganda/2006 L-fragment 7556 EF611987 Klein et al., unpub.  
FMDV-O Kumi District, Uganda, Jul 2002 CG† 7619 FJ461344 Christensen et al., 2004  
FMDV-O Kapchorwa District, Uganda, Oct 2002 CG† 7612 FJ461345 Christensen et al., 2004
FMDV-A10 Argentina/61 (A61) CG: S-frag.+L-frag. 368 M14409 Newton et al., 1986  
7107 X00429 Carroll et al., 1984 J02180; J02186; J02189
FMDV-A12 119/Kent/UK/32 (ab variant) CG: S-frag.+L-frag. 368 L11360 Bunch et al., 1994  
7712 M10975 Robertson et al., 1985  
FMDV-A22 Azerbaijan/USSR/65 CG: S-frag.+L-frag. 380 X74811 Sosnovtsev et al., unpub.  
7820 X74812  
FMDV-A PAK/3/2006 L-fragment 7623 EF117837 Klein et al., unpub.  
FMDV-A A/VN/09/2009 CG 8207 GQ406247 Le et al., 2010  
FMDV-A A/VN/02/2009 CG 8210 GQ406248 Le et al., 2010  
FMDV-A A/VN/03/2009 CG 8206 GQ406249 Le et al., 2010  
FMDV-A A/VN/11/2009 CG 8209 GQ406250 Le et al., 2010  
FMDV-A A/VN/16/2009 CG 8207 GQ406251 Le et al., 2010  
FMDV-A A/VN/20/2009 CG 8215 GQ406252 Le et al., 2010  
FMDV-C3 Argentina/85 CG 8161 AJ007347 Escarmis et al., 1998  
CG 8161 AJ007572 Escarmis et al., 1998  
FMDV-C1 Santa Pau/Spain/70 (C-S8c1) CG 8115 AJ133357 Toja et al., 1999  
FMDV-C1 Santa Pau/Spain/70 (rp99) CG 8115 AJ133358 Toja et al., 1999 derived from persistently infected BHK-21 cells, passage 99
FMDV-C1 Santa Pau/Spain/70 (rp146) CG 8115 AJ133359 Toja et al., 1999 derived from persistently infected BHK-21 cells, passage 146
FMDV-C1 Santa Pau/Spain/70 (MARLS clone) CG 8115 AF274010 Baranowski et al., 1998  
FMDV-C1 H595 (subjected to 95
plaque-to-plaque transfers)
CG 8115 AM409325 Herrera et al., 2007  
FMDV-Asia1 YNBS/China/58

CG

8163 AY390432 Chang et al., unpub.  
FMDV-Asia1 ZB/CHA/58 (attenuated)

CG

8193 DQ533483 Xin et al., unpub. attenuated for cattle by serial passages in suckling rabbit (187 times in sucking rabbit), then adapted BHK-21 cell 8 times
FMDV-Asia1 Jiangsu/China/2005 CG 8189 EF149009 Li et al., 2007  
FMDV-Asia1 HKN/CHA/05 CG 8187 EF149010 Li et al., 2007  
FMDV-Asia1 IND/63/72* CG 8167 AY304994 Saravanan et al., unpub.  
FMDV-Asia1 IND/81/86* CG 8227 DQ989306 Mohapatra et al., 2008  
FMDV-Asia1 IND/52/87* CG 8270 DQ989313 Mohapatra et al., 2008  
FMDV-Asia1 IND/21/89* CG 8275 DQ989316 Mohapatra et al., 2008  
FMDV-Asia1 IND/116/90* CG 8273 DQ989305 Mohapatra et al., 2008  
FMDV-Asia1 IND/13/91* CG 8270 DQ989312 Mohapatra et al., 2008  
FMDV-Asia1 IND/247/92* CG 8272 DQ989307 Mohapatra et al., 2008  
FMDV-Asia1 IND/47/93* CG 8272 DQ989315 Mohapatra et al., 2008  
FMDV-Asia1 IND/151/94* CG 8227 DQ989303 Mohapatra et al., 2008  
FMDV-Asia1 IND/82/96* CG 8275 DQ989309 Mohapatra et al., 2008  
FMDV-Asia1 IND/397/97* CG 8275 DQ989308 Mohapatra et al., 2008  
FMDV-Asia1 IND/101/99* CG 8204 DQ989310 Mohapatra et al., 2008  
FMDV-Asia1 IND/334/00* CG 8227 DQ989304 Mohapatra et al., 2008  
FMDV-Asia1 IND/148/01* CG 8274 DQ989317 Mohapatra et al., 2008  
FMDV-Asia1 IND/354/01* CG 8273 DQ989314 Mohapatra et al., 2008  
FMDV-Asia1 IND/423/01* CG 8274 DQ989319 Mohapatra et al., 2008  
FMDV-Asia1 IND/438/01* CG 8273 DQ989321 Mohapatra et al., 2008  
FMDV-Asia1 IND/37/02* CG 8188 DQ989311 Mohapatra et al., 2008  
FMDV-Asia1 IND/61/02* CG 8269 DQ989318 Mohapatra et al., 2008  
FMDV-Asia1 IND/139/02* CG 8251 DQ989322 Mohapatra et al., 2008  
FMDV-Asia1 IND/182/02* CG 8273 DQ989320 Mohapatra et al., 2008  
FMDV-Asia1 IND/97/03* CG 8279 DQ989323 Mohapatra et al., 2008  
FMDV-Asia1 Kimron (Israel/57) (attenuated) CG 8141 AY593797 Carrillo et al., 2005  
FMDV-Asia1 ISR/3/63 CG 8192 AY593796 Carrillo et al., 2005  
FMDV-Asia1 LEB/1/83* CG 8196 AY593799 Carrillo et al., 2005  
FMDV-Asia1 LEB/2/83* CG 8196 AY593800 Carrillo et al., 2005  
FMDV-Asia1 LEB/3/83* CG 8196 AY593798 Carrillo et al., 2005  
FMDV-Asia1 MOG/05 CG 8193 EF614458 Lee et al., unpublished  
FMDV-Asia1 PAK/1/54 CG 8186 AY593795 Carrillo et al., 2005  
FMDV-SAT1 RV/11/37 CG 8141 AY593839 Carrillo et al., 2005  
FMDV-SAT1 BEC/1/48 CG 8173 AY593838 Carrillo et al., 2005  
FMDV-SAT1 SWA/1/49 CG 8179 AY593840 Carrillo et al., 2005  
FMDV-SAT1 SR/2/58 CG 8177 AY593841 Carrillo et al., 2005  
FMDV-SAT1 SA/13/61 CG 8176 AY593842 Carrillo et al., 2005  
FMDV-SAT1 SWA/40/61 CG 8180 AY593843 Carrillo et al., 2005  
FMDV-SAT1 ISR/4/62 CG 8190 AY593844 Carrillo et al., 2005  
FMDV-SAT1 RHO/5/66 CG 8133 AY593846 Carrillo et al., 2005  
FMDV-SAT1 BOT/1/68 CG 8175 AY593845 Carrillo et al., 2005  
FMDV-SAT2 RHO/1/48 CG 8119 AY593847 Carrillo et al., 2005  
FMDV-SAT2 KEN/3/57 L-fragment 7774 AJ251473 J.W.I. Newman et al., unpub.; N.J. Knowles et al., unpub.  
FMDV-SAT2 SA/106/59 CG 8135 AY593848 Carrillo et al., 2005  
FMDV-SAT2 KEN/11/60 CG 8203 AY593849 Carrillo et al., 2005  
FMDV-SAT2 ZIM/7/83 CG 8173 AF540910 van Rensburg and Nel, 1999; van Rensburg et al., 2002; van Rensburg et al., 2004  
FMDV-SAT2 Murchison Falls N.P., Uganda, Aug 2002 CG† 7637 FJ461346 Christensen et al., 2004  
FMDV-SAT3 BEC/20/61 CG 8164 AY593851 Carrillo et al., 2005  
FMDV-SAT3 BEC/20/61 (from stock of SAT2/KEN/11/60) CG 8164 AY593852 Carrillo et al., 2005  
FMDV-SAT3 BEC/1/65 CG 8131 AY593853 Carrillo et al., 2005  
FMDV-SAT3 SA/57/59 CG 8170 AY593850 Carrillo et al., 2005  

*, not a WRLFMD reference number